1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtattacactgttagagtgagtgcacgtgaatatactggctatctgtaaaacttgttgtctcagtttctccctgaccaggatttattttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGTGGCAAAGCACACATGTACATACTCATGGTTCTCTTTACTGAAGCCACCA
species | Oryza sativa |
transcript | LOC_Os01g60120.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT CTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGTEST: gi|87023693|gb|CI286444.1|CI286444
genomic: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATATgtaagtatta ... tttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGT
EST: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT CTCCTGCATCATGGACTTTCGATGTEST: gi|29664738|gb|CB661013.1|CB661013
genomic: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATATgtaagtatta ... tttatctcagCTCCTGCATCATGGACTTTCGATGT
EST: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT CTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGTEST: gi|8527754|gb|AU092569.1|AU092569
genomic: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATATgtaagtatta ... tttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGT
EST: ATTTGGTGATGATCCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT CTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGTEST: gi|29669064|gb|CB665339.1|CB665339
genomic: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATATgtaagtatta ... tttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGT
EST: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT CTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGT
genomic: ATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATATgtaagtatta ... tttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGT
atctgtaaaacttgttgtctcagtttctccctgaccaggatttattttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGTGGCAAAGCACACATGTACATACTCATGGTTCTCTTTACTGAAGCCACCA
ccctgac putative branch site (score: 3)
ttttatctc putative PPT
atttattttatctca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattacactgttagagtgagtgcacgtgaatatactggctatctgtaaaacttgttgtctcagtttctccctgaccaggatttattttatctcagCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGTGGCAAAGCACACATGTACATACTCATGGTTCTCTTTACTGAAGCCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC