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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctgcattacctttgttctttcttttccttcactatgctgctctaaggaatttgcaagatctataacttactccttgattttgtattttttgttcatagGCAAATGATCCAACTATCGAGCGTATTATCACCCCAAGAATTGCTCTCACCACAGCAGAATACTTGGCATATGAGTGCGGGAAGCATGTTCTTGTCATCC

Basic information

species Oryza sativa
transcript LOC_Os01g51380.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51380.1 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 8
gtatatctgcattacctttgttctttcttttccttcactatgctgctc--taaggaatttgcaagatctataacttactccttgattttgtattt---tttgttcatagGCAAATGATCCAACTATCGAGCGTATTATCACCCCAAGAATTGCTCTCACCACAGCAGAATACTTGGCATATGAGTGCGGGAAGCATGTTCTTGTCATCC
         |||          || ||||     ||  |||     |   |||   | |      |   | |  |      || |||||| ||||    |  ||   |||| ||||||||||| || |||||||| ||||| ||  ||||||| ||||| || || ||||| |  || |||||||| |||||||||||  | ||||| |
---------catgtttccaaccctctcttcgttctcggtatcaaatttcgtaaatcagtgctggaacgaacatttcgtgttttaattttgaatttatactgatttgcagGCTAATGATCCAACAATTGAGCGTATCATCACTCCTCGAATTGCACTCACTACTGCTGAATATTATGCTTATGAGTGTGGGAAGCATGTGTTGGTCATAC

upper sequence: LOC_Os01g51380.1 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------------------------------------------------------------------------------------gtatatctgcattacctttgttc--tttcttttccttcactatgctgctctaaggaatttgcaagatctataacttactccttgattttgtattttttgttcatagGCAAATGATCCAACTATCGAGCGTATTATCACCCCAAGAATTGCTCTCACCACAGCAGAATACTTGGCATATGAGTGCGGGAAGCATGTTCTTGTCATCC
                                                                                                    | | |    | | |      ||  |||   | |  ||  |  | |  | |   | |||   ||| |||  || ||  |  | |  |     | ||  | |   |||| ||||||||||| || |||||||||||||| ||  ||||||| || || || || || ||||  || |||||||| || ||||| ||||| |||||||
gtatgtacatcttcagttttcttttatcgtcgattttcaccacatttttggattatatatggaacttcatccagtttcttttcgtaatggaagagtcgtctgttttgagacttcacaaagtcaattttcctccagtccttgcgtttttttcctggatt---aagttctggaattttattttaggatc---gtcttgggctttcagGCTAATGATCCAACAATTGAGCGTATTATCACACCTCGAATTGCACTTACAACTGCTGAGTACTACGCTTATGAGTGTGGAAAGCACGTTCTGGTCATCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggaatttgcaagatctataacttactccttgattttgtattttttgttcatagGCAAATGATCCAACTATCGAGCGTATTATCACCCCAAGAATTGCTCTCACCACAGCAGAATACTTGGCATATGAGTGCGGGAAGCATGTTCTTGTCATCC
                                         ttttttgttc  CT-rich tract
                                 attttgtattttttgt  TA-rich tract