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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccacatttccacagtttcctgctaaactttgtttgatgacttctaaaccgaaaatttggattcctgattacgacaaaagaataagataagacttaattagctatttatagtaaaagcataaatagttggcatataaaaagttctctctgatcttattgctgatttcaatttggcagATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g51380.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33811101|gb|CF331441.1|CF331441
EST:     ATATCACTGAGGGACAGATCTACATTGACAGGCAACTACATAATCGACAG                         ATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG
genomic: ATATCACTGAGGGACAGATCTACATTGACAGGCAACTACATAATCGACAGgtattccaca ... aatttggcagATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG
EST: gi|58687170|gb|CK075857.1|CK075857
EST:     ATATCACTGAGGGACAGATCTACATTGACAGGCAACTACATAATCGACAG                         ATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG
genomic: ATATCACTGAGGGACAGATCTACATTGACAGGCAACTACATAATCGACAGgtattccaca ... aatttggcagATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG
EST: gi|27576717|gb|CA999411.1|CA999411
EST:     ATATCACTGAGGGACAGATCTACATTGACAGGCAACTACATAATCGACAG                         ATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG
genomic: ATATCACTGAGGGACAGATCTACATTGACAGGCAACTACATAATCGACAGgtattccaca ... aatttggcagATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagttggcatataaaaagttctctctgatcttattgctgatttcaatttggcagATCTATCCACCGATTAATGTCCTTCCTTCACTCTCCCGGCTCATGAAG
                                   tgctgat  putative branch site (score: 3)
         atataaaaagttct  TA-rich tract