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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggatcttctgcttgattcacaataaccatatatggactgagtctagcttgtaagtagcctagtattgatattgttgaactactcacactttgtaagtttttcttttaaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAGTGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g51380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88352648|gb|CI624587.1|CI624587
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88724403|gb|CI747662.1|CI747662
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88433134|gb|CI569803.1|CI569803
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|58672899|gb|CK061585.1|CK061585
EST:     GCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGCAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: GCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTG-AGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88358211|gb|CI605136.1|CI605136
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88360936|gb|CI625242.1|CI625242
EST:     TGCAAATGGTAATGTCGAAACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|163927702|gb|EG710506.1|EG710506
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88317359|gb|CI628008.1|CI628008
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88345261|gb|CI627902.1|CI627902
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88397163|gb|CI593375.1|CI593375
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88371072|gb|CI597549.1|CI597549
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88360978|gb|CI625284.1|CI625284
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|86901596|gb|CI310358.1|CI310358
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88356589|gb|CI626204.1|CI626204
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88724311|gb|CI747570.1|CI747570
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88314360|gb|CI604844.1|CI604844
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|88388263|gb|CI627802.1|CI627802
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
EST: gi|66915737|gb|CX102585.1|CX102585
EST:     TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGG                         AGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG
genomic: TGCAAATGGTAATGTCGACACGGAGGAAGGAACTCTTGAGATTGGGATGGgtacggatct ... aaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgatattgttgaactactcacactttgtaagtttttcttttaaaaatgcagAGTACAGGACAGTCTCTGGAGTTGCTGGTCCTCTAGTCATTCTTGATAAAGTGAAG
                  tactcac  putative branch site (score: 1)
                                   tttttctttta  putative PPT
                           tttgtaagtttttctt  TA-rich tract