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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccctcatgcatgacctgacattgttattcttaaactccttaattattttaagttttaacctcctaatcaactgatctatgaaaaaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGAGCATATGACACACGCAACATCTTCCAGTCGCTTGACCTCGCCTGGTCAC

Basic information

species Oryza sativa
transcript LOC_Os01g51380.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51380.2 (Oryza sativa), 3'ss of exon 14
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 13
------------------------------------------------gtaaccctcatgc----atgacct--gacattgttattcttaaactccttaattattttaag-ttttaacctcctaatcaactgatctatgaaaaaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGAGCATATGACACACGCAACATCTTCCAGTCGCTTGACCTCGCCTGGTCAC
                                                | || |  |||      |||   |   ||||| |   |  ||   |   |  |  | | ||| |||| ||  |||||| |     || |        ||| ||| ||||  | || |||||||||||||||||||||||||| ||| | |||||  | || || || ||  |||| || |||||  | ||||| ||||||||  
gtatccatctcattctatttgcccgttacgcagtggacatcctacaatgaaatctccatatgttgatggttttgaacattatctctagtacgttatctc-tggtctgaagcttttcactccctaatgacactctcaaccggctctatg-cagTTGTATTTGGAATTTCTTGACAAGTTCGAGCGGAAGTTTGTGGCTCAAGGCCCTTACGATACCCGTGACATTTTTCAGTCATTGGACCTTGCCTGGTCCT

upper sequence: LOC_Os01g51380.2 (Oryza sativa), 3'ss of exon 14
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 13
------------------------gtaaccctcatgcatgacctgacatt----gttattcttaaactccttaattattt--taagttttaacctcctaatcaactgatctatgaaaaaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGAGCATATGACACACGCAACATCTTCCAGTCGCTTGACCTCGCCTGGTCAC
                         | |   |  | ||| |  |||   |    ||||| ||  |   | |   ||| |   | || | |  |  | | || |     || |      |  |||||| |||| |||||||| ||||||||||||||||||||||| ||  | |||||  | ||||| || ||  |||| |||||||| || ||||| ||||||||| 
gtacctgttgcttcatattttctgtttatgatatttcatcatttgatgctctctgttatcctgtagagcttagtttactgagtcagatctgtctgcgtgataatgacttcaaattgttacttgacagTTGTATCTCGAGTTCCTTGACAAGTTCGAGCGGAAGTTTGTCGCCCAAGGTCCTTATGATACCCGTGACATTTTCCAGTCACTGGACCTTGCCTGGTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88840140|gb|CI079594.1|CI079594
EST:     TTGGAGAGGAAGCGCTGTCATCAGAGGACCTG                         CTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
genomic: TTGGAGAGGAAGCGCTGTCATCAGAGGACCTGgtaaccctca ... aaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
EST: gi|86541335|gb|CI181541.1|CI181541
EST:     GAGAGGAAGCGCTGTCATCAGAGGACCTG                         CTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
genomic: GAGAGGAAGCGCTGTCATCAGAGGACCTGgtaaccctca ... aaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
EST: gi|58687170|gb|CK075857.1|CK075857
EST:     AGGCGATGAAGGCAGTGGTTGGAGAGGAAGCGTTGTCATCAGAGGACCTG                         CTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
genomic: AGGCGATGAAGGCAGTGGTTGGAGAGGAAGCGCTGTCATCAGAGGACCTGgtaaccctca ... aaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
EST: gi|86834967|gb|CI346051.1|CI346051
EST:     AGGCGATGAAGGCAGTGGTTGGAGAGGAAGCGCTGTCATCAGAGGACCTG                         CTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
genomic: AGGCGATGAAGGCAGTGGTTGGAGAGGAAGCGCTGTCATCAGAGGACCTGgtaaccctca ... aaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
EST: gi|88225844|gb|CI225760.1|CI225760
EST:     AGGCGATGAAGGCAGTGGTTGGAGAGGAAGCGCTGTCATCAGAGGACCTG                         CTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA
genomic: AGGCGATGAAGGCAGTGGTTGGAGAGGAAGCGCTGTCATCAGAGGACCTGgtaaccctca ... aaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattattttaagttttaacctcctaatcaactgatctatgaaaaaaatgacagCTGTACCTCGAGTTTCTTGACAAGTTCGAGCGGAAGTTCGTGACACAAGGAGCATATGACACACGCAACATCTTCCAGTCGCTTGACCTCGCCTGGTCAC
     tattttaagttttaa  TA-rich tract