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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTATTGGTGAAGGCATGACTCGCAGGGATCATTCTGATGTCTCGAACCAGgtcggttgggcgttcatagcctatgttctgcacaaactaccttaaccaagtatatatatggagtatttactcggatgtgtttgtttcag

Basic information

species Oryza sativa
transcript LOC_Os01g51380.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687170|gb|CK075857.1|CK075857
EST:     CTATTGGTGAAGGCATGACTCGCAGGGATCATTCTGATGTCTCGAACCAG                         CTGTATGCCAATTACGCCATAGGCAAGGACGTACAGGCGATGAAGGCAGTG
genomic: CTATTGGTGAAGGCATGACTCGCAGGGATCATTCTGATGTCTCGAACCAGgtcggttggg ... tttgtttcagCTGTATGCCAATTACGCCATAGGCAAGGACGTACAGGCGATGAAGGCAGTG
EST: gi|86834967|gb|CI346051.1|CI346051
EST:     CTATTGGTGAAGGCATGACTCGCAGGGATCATTCTGATGTCTCGAACCAG                         CTGTATGCCAATTACGCCATAGGCAAGGACGTACAGGCGATGAAGGCAGTG
genomic: CTATTGGTGAAGGCATGACTCGCAGGGATCATTCTGATGTCTCGAACCAGgtcggttggg ... tttgtttcagCTGTATGCCAATTACGCCATAGGCAAGGACGTACAGGCGATGAAGGCAGTG
EST: gi|88225844|gb|CI225760.1|CI225760
EST:     ATCATTCTGATGTCTCGAACCAG                         CTGTATGCCAATTACGCCATAGGCAAGGACGTACAGGCGATGAAGGCAGTG
genomic: ATCATTCTGATGTCTCGAACCAGgtcggttggg ... tttgtttcagCTGTATGCCAATTACGCCATAGGCAAGGACGTACAGGCGATGAAGGCAGTG