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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCGAAGGAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattctttttccccgtgaatttgtgctaatatgtagtggcactgtttaaaatagtgacccggatctctggcattcactaaataaagttgtcaatcc...

Basic information

species Oryza sativa
transcript LOC_Os01g51380.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88433134|gb|CI569803.1|CI569803
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
EST: gi|58672899|gb|CK061585.1|CK061585
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
EST: gi|88358211|gb|CI605136.1|CI605136
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
EST: gi|88360936|gb|CI625242.1|CI625242
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GT-CTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGT
EST: gi|163927702|gb|EG710506.1|EG710506
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
EST: gi|88317359|gb|CI628008.1|CI628008
EST:     GAACATCTGGTATTGACAACAAATACACA-CTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCT
EST: gi|88397163|gb|CI593375.1|CI593375
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
EST: gi|88360978|gb|CI625284.1|CI625284
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTAAAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
EST: gi|88356589|gb|CI626204.1|CI626204
EST:     GAACATCTGGTATTGACAACAAATACA-AACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCT
EST: gi|88388263|gb|CI627802.1|CI627802
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATG
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATG
EST: gi|66915737|gb|CX102585.1|CX102585
EST:     GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAG                         GTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT
genomic: GAACATCTGGTATTGACAACAAATACACAACTGTACAATTCACCGGTGAGgtaatattct ... cttttttcagGTTCTAAAAACTCCAGTGTCACTGGATATGCTTGGACGTGTCTTCAATGGT