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GTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGgtactgcacatcatatgtctatttattttatgtatttctttttaactaacatgggagtgatgtagttgtattgccaattctatagacatgataatgcctg...
species | Oryza sativa |
transcript | LOC_Os01g44394.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG GCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATEST: gi|86501979|gb|CI144612.1|CI144612
genomic: CTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGgtactgcaca ... tgttttgcagGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGAT
EST: CTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG GCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATEST: gi|88538285|gb|CI467300.1|CI467300
genomic: CTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGgtactgcaca ... tgttttgcagGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGAT
EST: CAAAGGGTTAAG GCTTGCAATAAGTGTCCGTCACCCATCACATCCAGTACATTCAATCAGGAGEST: gi|9865435|gb|AU101185.1|AU101185
genomic: CAAAGGCTTAAGgtactgcaca ... tgttttgcagGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGAT
EST: CTGATGGAGGTTTCAACTTTTGGGACAAGGNCAGTAAGCAAAGGCTTAAG GCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATEST: gi|88522457|gb|CI450218.1|CI450218
genomic: CTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGgtactgcaca ... tgttttgcagGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGAT
EST: GTAAGCAAAGGGTTAAG GCTTTCAATAAGTGTCCGTCACCCATCACATGCANTACATTCAATCAGGATEST: gi|86251611|gb|CI016900.1|CI016900
genomic: GTAAGCAAAGGCTTAAGgtactgcaca ... tgttttgcagGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGAT
EST: CTGATGGAGGTTTCAACCTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG GCTTTCAATAAGTGTCCGTCACCCACCACATGCAGTACATTCAATCAGGGT
genomic: CTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGgtactgcaca ... tgttttgcagGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAGgtactgcacatcatatgtctatttattttatgtatttctttttaactaacatgggagtgatgtagttgtattgccaattctatagacatgataatgcctg
- - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG