1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcctctgcaccaacgcatacatacatgtgaacacaatgaggagaatgatcattttttgcaactaatgtctaacaacagatttataaccaaattcattaagGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACT
species | Oryza sativa |
transcript | LOC_Os01g44394.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgatcattttttgcaactaatgtctaacaacagatttataaccaaattcattaagGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACT
ttataac putative branch site (score: 8)
atttataaccaaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctctgcaccaacgcatacatacatgtgaacacaatgaggagaatgatcattttttgcaactaatgtctaacaacagatttataaccaaattcattaagGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- ctctgca
- - - - - - - gcataca
- - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - acacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa