1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggcccttccatatagtttgctcccattagctcgttatagatgtggaatcttcgatttctgcactctgtatttccctgcattgacatctagttggttgatttcatgcag
species | Oryza sativa |
transcript | LOC_Os01g44394.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCG GTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTEST: gi|88394136|gb|CI684807.1|CI684807
genomic: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggc ... tttcatgcagGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGT
EST: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCG GTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTEST: gi|88310581|gb|CI672439.1|CI672439
genomic: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggc ... tttcatgcagGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGT
EST: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCG GTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTEST: gi|88583567|gb|CI701059.1|CI701059
genomic: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggc ... tttcatgcagGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGT
EST: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCG GTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTCTCGGGAGGTEST: gi|88587735|gb|CI704447.1|CI704447
genomic: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggc ... tttcatgcagGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGT
EST: AGCCTGCAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCG GTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGT
genomic: AGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggc ... tttcatgcagGTGCTGTGCTCGGCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGgtactgcggcccttccatatagtttgctcccattagctcgttatagatgtggaatcttcgatttctgcactctgtatttccctgcattgacatctagttggttgatttcatgcag
- - - - - - - - - - - TGGAGG