1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atttgattacttgcctattgcctcaggattaaattatcagcagctctcttgaaataactacttttgttgatttgtttgttatactgcacatttcatctagGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG
species | Oryza sativa |
transcript | LOC_Os01g44394.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCT GTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGEST: gi|9865435|gb|AU101185.1|AU101185
genomic: ACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTgtaagatccc ... tttcatctagGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGG
EST: ACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCT GTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGEST: gi|86251611|gb|CI016900.1|CI016900
genomic: ACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTgtaagatccc ... tttcatctagGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGG
EST: ACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCT GTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACCTTTGG
genomic: ACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTgtaagatccc ... tttcatctagGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGG
ctcttgaaataactacttttgttgatttgtttgttatactgcacatttcatctagGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG
tttcatct CT-rich tract
aaataactactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgattacttgcctattgcctcaggattaaattatcagcagctctcttgaaataactacttttgttgatttgtttgttatactgcacatttcatctagGTGCACCATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - -tacttgc
- - - - - - - ctattgc
- - - - - - - - - - - - - - - - - - tcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgca