Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCCCCAAAATTTCCCAAACTCCCCGCCGCCCAACACAATGGCGAGCTTTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAGgtgcgtcctcgcgccgtcgcgcgcgcgcggccgccgccacccttcgcctgcacggctctccctggctgagtctcgattcgattcgtttcgattctgatggatttgttcgcgttccttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g44394.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88579266|gb|CI688246.1|CI688246
EST:     TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAG                         GTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
genomic: TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAGgtgcgtcctc ... ttccttgcagGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
EST: gi|88394136|gb|CI684807.1|CI684807
EST:     TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAG                         GTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
genomic: TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAGgtgcgtcctc ... ttccttgcagGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
EST: gi|88310581|gb|CI672439.1|CI672439
EST:     TTACCGCCGGCGGGGGCGGNGCCAACAACAACCCCAACAAGTCCCTCGAG                         GTGAATCCGGCGCCCGGGGAATCGGTTTCCAGCCTCAGCTTCACTCCCAAG
genomic: TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAGgtgcgtcctc ... ttccttgcagGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
EST: gi|88583567|gb|CI701059.1|CI701059
EST:     TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAG                         GTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
genomic: TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAGgtgcgtcctc ... ttccttgcagGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
EST: gi|88587735|gb|CI704447.1|CI704447
EST:     TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAG                         GTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG
genomic: TTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAGgtgcgtcctc ... ttccttgcagGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAG