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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTTTGAGGAGGAGGGTATCGACCTGCAAACTGGCAAGAAGGAAGCTGCACTTGTTGGAAATCTTTGTGCATTTCAATTCTGGCAGCGTATGTTTAAGgtatatcatatctgtaataatcatgttccttgtgcatatttacaggccttatgcagttaataattgattcaacatttatgtttcaggcgcatgtcaattg...

Basic information

species Oryza sativa
transcript LOC_Os01g15300.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15300.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G146047_T01 (Zea mays), 5'ss of exon 9
---TTACTTTGAGGAGGAGGGTATCGACCTGCAAACTGGCAAGAAGGAAGCTGCACTTGTTGGAAATCTTTGTGCATTTCAATTCTGGCAGCGTATGTTTAAGgtatatcatatctgtaataatcatgttccttg---tgcatatttacaggccttatgcagt--taataattgattcaacatttatgtt-tcaggcgc--atgtcaattg------------------------------------------------------------------------------------
   ||| ||  |||   | || |  |   | ||||  ||||| ||||||||| |     ||||||||||||||||||||||||| ||| ||||  | ||||||||||||| ||| ||||||||||    | | |    || | ||||    |  || |   |    | | ||   || ||   |||     | |   ||  |  |  |||                                                                                     
CAATTATTTCAAGGGAAATGGCAGTG---TACAAATCGGCAAAAAGGAAGCTACCACCATTGGAAATCTTTGTGCATTTCAATTTTGGGAGCGCGTTTTTAAGgtatatcctatgtgtaataatccctgtgcatacattggacatttgatagttttgttttgcaacattgataagttgaagtcttaaaccatgaaatgccaacatgtattagaacaattttttcgcttcagttttaaaatgcccttgaagtttttattgtctgcaatttaggattaaattcgccttgtatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88301558|gb|CI597251.1|CI597251
EST:     CACTTGTTGGAAATCTTTGTGCATTTCAATTCTGGCAGCGTATGTTTAAG                         GACAAGTATCGTCTGGATTGTCTGATAAATGTGGTGAACACTCATGAACCG
genomic: CACTTGTTGGAAATCTTTGTGCATTTCAATTCTGGCAGCGTATGTTTAAGgtatatcata ... tatgttgcagGACAAGTATCGTCTGGATTGTCTGATAAATGTGGTGAACACTCATGAACCG
EST: gi|66921833|gb|CX108681.1|CX108681
EST:     CACTTGTTGGAAATCTTTGTGCATTTCAATTCTGGCAGCGTATGTTTAAG                         GACAAGTATCGTCTGGATTGTCTGATACATGTGGTGAACACTCATGAACCG
genomic: CACTTGTTGGAAATCTTTGTGCATTTCAATTCTGGCAGCGTATGTTTAAGgtatatcata ... tatgttgcagGACAAGTATCGTCTGGATTGTCTGATAAATGTGGTGAACACTCATGAACCG