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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGTGATACTGGCTCCATCTGTGAAGGAATTCTGATAAGCATCATGCTGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgtttttgttgcatcatgactaatgcttgcatcatcatgttgtagtagttatatgttgtacgttttgttttacag

Basic information

species Oryza sativa
transcript LOC_Os01g15300.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15300.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G146047_T01 (Zea mays), 5'ss of exon 8
ATTTGGTGATACTGGCTCCATCTGTGAAGGAATTCTGATAAGCATCATGCTGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtg-----tttttgttgcatcatgactaatgcttgcatcatca--------tgttgtagtagttatatgttgtacgttttgttttacag
|||| ||||   |||  | |||  |||||||||||| ||||||||||||||||||||||| || || |||||| | ||  |||||||  | | | || |||||||||      ||| ||||  | |||    || ||| ||||  ||        |||||| ||||||||    |||    | ||||||||||
ATTTTGTGAGCTTGGTGCTATCCATGAAGGAATTCTAATAAGCATCATGCTGGACATCCAGCCGCTTCCTATCTTGCACACTTTTGGCTATCGAGAACTGgtatgtggtatgctttagttgggttatggaccatcctt-catctccaattccaagtgttgtggtagttattccctgtta--tctgttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88301558|gb|CI597251.1|CI597251
EST:     TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTG                         TGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
genomic: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgttt ... tgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
EST: gi|66921833|gb|CX108681.1|CX108681
EST:     TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTG                         TGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
genomic: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgttt ... tgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
EST: gi|88731488|gb|CI755101.1|CI755101
EST:     TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTG                         TGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
genomic: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgttt ... tgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA