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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCGCGGGCGCCGCTCGCCGTGGAGGCGCTCCGGGGGAAGATCGTGGAGAAGGTGAAGGGGAACCGCGTCACTCTCATCGTGGGGGACACCGGATGCGgtaaccgcactgattgctctctccctccccctgtgtgtgtgtgttctagtttcgactccatccgctcgcgccgaatgtgcgattggctcccatggtcggt...

Basic information

species Oryza sativa
transcript LOC_Os01g15300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G146047_T01 (Zea mays), 5'ss of exon 1
GAGGCGCGGGCGCCGCTCGCCGTGGAGGCGCTCCGGGGGAAGATCGTGGAGAAGGTGAAGGGGAACCGCGTCACTCTCATCGTGGGGGACACCGGATGCGgtaaccgc-actgattgctctctccctccccctgtgtgtgtgtgttctagttt-cgactccatccgctcgcgccgaatgtgcgattggctcccatggtcggt
||||||| | |||||||||||||||||||||| || |  || ||||| ||||||||||||| |||||||||||| || |||||||||||||| |||||||||||   |    | || |  |||| |    |||    |  |  |||||| | |  |  | || | | | |       ||   ||     |   ||| |  | 
GAGGCGCCGCCGCCGCTCGCCGTGGAGGCGCTTCGCGACAAAATCGTCGAGAAGGTGAAGGCGAACCGCGTCACGCTGATCGTGGGGGACACTGGATGCGgtaatttccggcggtttccttctcacattaccttctcg-atcggttctactgtgtgtgtgcacctgatggtttgctgtg-atgaagccgttttatgctttgg

upper sequence: LOC_Os01g15300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv07s0005g00310.t01 (Vitis vinifera), 5'ss of exon 1
GAGGCGCGGGCGCCGCTCGCCGTGGAGGCGCTCCGGGGGAAGATCGTGGAGAAGGTGAAGGGGAACCGCGTCACTCTCATCGTGGGGGACACCGGATGCGgtaaccgcactgattgctctctccctccccctgtgtgtgtgtgttctagtttcgactccatccgctcgcgccgaatgtgcgattggctcccatggtcggt----
|  |      || | ||| | ||   |||  |  ||  |||||||||||||||| | | || ||| ||||||||||||||||| || || || || ||||||||    |         |   |        || || |  ||  | |  ||              | | |    | ||| ||||   ||  || || | |    
GCCGATTTCTCGACCCTCCCGGTAATGGCTTTGAGGAAGAAGATCGTGGAGAAGATTATGGAGAATCGCGTCACTCTCATCGTCGGCGAAACTGGCTGCGgtaattcgatactcaaaacgggcaaatagtttgagttttagttgtttgatt---gtcttggagttttgagtttga-gtgtgattctttctgattgtggttggag