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gtatgtgtttttgttgcatcatgactaatgcttgcatcatcatgttgtagtagttatatgttgtacgttttgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAAACTGGCAAGAAGGAAGCTGCACTTGTTGGAAATCTTTGTGCATTTCAAT
species | Oryza sativa |
transcript | LOC_Os01g15300.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTG TGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAAEST: gi|66921833|gb|CX108681.1|CX108681
genomic: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgttt ... tgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
EST: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTG TGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAAEST: gi|88731488|gb|CI755101.1|CI755101
genomic: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgttt ... tgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
EST: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTG TGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
genomic: TGGACATCCAACCCCTGCCTATCGTCCAACCTTTTGGTCACCAACAATTGgtatgtgttt ... tgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAA
taatgcttgcatcatcatgttgtagtagttatatgttgtacgttttgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAAACTGGCAAGAAGGAAGCTGCACTTGTTGGAAATCTTTGTGCATTTCAAT
gactaat putative branch site (score: 2)
ttttgtttt putative PPT
ttttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtttttgttgcatcatgactaatgcttgcatcatcatgttgtagtagttatatgttgtacgttttgttttacagTGCAAAATGTATAGAAACAATTACTTTGAGGAGGAGGGTATCGACCTGCAAACTGGCAAGAAGGAAGCTGCACTTGTTGGAAATCTTTGTGCATTTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC