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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgggttggagggagcattatttatcgcaattattaataattggtcctttttgttcatattaagttaaaattctcactatcaggcatttatttctgacagTCCTGCTGCAAAAAGTTCTTGACCCGCCAGATTCGGATGTTGTTGAAGATGCATTGGAATCTCTTGTTCAAATTCGTGCTTTAGATAAGCCAACCTCTCC

Basic information

species Oryza sativa
transcript LOC_Os01g15300.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66921833|gb|CX108681.1|CX108681
EST:     CAGAGCTATGAACGAT-CTCATG                         TCCTGCTGCAAAAAGTTCTTGACCCGCCAGATTCGGATGTTGTTGAAGATG
genomic: CAGAGCTATGAACGATCCTCATGgtaattcttt ... tttctgacagTCCTGCTGCAAAAAGTTCTTGACCCGCCAGATTCGGATGTTGTTGAAGATG
EST: gi|88731488|gb|CI755101.1|CI755101
EST:     AGAGTCCAGAGCTATGAACGATCCTCATG                         TCCTGCTGCAAAAAGTTCTTGACCCGCCAGATTCGGATGTTGTTGAAGATG
genomic: AGAGTCCAGAGCTATGAACGATCCTCATGgtaattcttt ... tttctgacagTCCTGCTGCAAAAAGTTCTTGACCCGCCAGATTCGGATGTTGTTGAAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttttgttcatattaagttaaaattctcactatcaggcatttatttctgacagTCCTGCTGCAAAAAGTTCTTGACCCGCCAGATTCGGATGTTGTTGAAGATGCATTGGAATCTCTTGTTCAAATTCGTGCTTTAGATAAGCCAACCTCTCC
                         ttctcac  putative branch site (score: 2)
                                         tttatttct  putative PPT
     ttgttcatattaagtt  TA-rich tract