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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTTTTCCAGCATATTGCCATCAAGACCTTGTCAGAAAAGATGTCAGATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctcaagttctattacaaattcaaattcccttcactcacactattcagctaaaaacaacttcctatttaatgtgtaatacatgtttcaagttag...

Basic information

species Oryza sativa
transcript LOC_Os01g15300.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86599175|gb|CI355792.1|CI355792
EST:     GATCATGAATAACGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTAT
genomic: GATCATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATT-GGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTAT
EST: gi|88563839|gb|CI494556.1|CI494556
EST:     CGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: CGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|86833164|gb|CI333763.1|CI333763
EST:     ATGAATAACGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: ATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|88257298|gb|CI359686.1|CI359686
EST:     TTTGCAGGTCATCGTGATCATGAATAACGCAAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: TTTGCAGGTCATCGTGATCATGAATAACGC-AAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|86867385|gb|CI337849.1|CI337849
EST:     ATTTGCAGGTCATCGTGATCATGAATAACGCAAAAGTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|88564021|gb|CI494738.1|CI494738
EST:     ACGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: ACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|58655440|gb|CK044120.1|CK044120
EST:     ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|88906482|gb|CI375554.1|CI375554
EST:     ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|86599323|gb|CI355940.1|CI355940
EST:     AATAACCCAAAATTTGTTCAGTTACAG                         CTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: AATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|88564544|gb|CI495261.1|CI495261
EST:     CAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: CAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
EST: gi|27548012|gb|CA766115.2|CA766115
EST:     ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAG                         GTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG
genomic: ATTTGCAGGTCATCGTGATCATGAATAACGCAAAATTTGTTCAGTTACAGgtaaattctc ... gtttctctagGTCGAAAGATTGGCAAGAGAGTGCTTCTTATTTCTGGGTGAATCATTTATG