1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgtcatttcttctctgtgttttttttctttcatagtacagattttgatgtgaactttgctgctctggtttcag
species | Oryza sativa |
transcript | LOC_Os01g13730.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAG ATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTAEST: gi|29635043|gb|CB640052.1|CB640052
genomic: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgt ... ctggtttcagATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTA
EST: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAG ATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTAEST: gi|2310653|gb|C26808.1|C26808
genomic: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgt ... ctggtttcagATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTA
EST: AGAAAGCGGTTNAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAG ATATTTGCTAGGCCATTTATTGGEST: gi|29634783|gb|CB639792.1|CB639792
genomic: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgt ... ctggtttcagATATTTGCTAGGCCATTTATTGG
EST: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAG ATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTAEST: gi|58676759|gb|CK065446.1|CK065446
genomic: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgt ... ctggtttcagATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTA
EST: AGAAAGCGGTTGAATACACCAGNGCTCTTAATGCTGCGAAGTTAGAGAAG ATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTAEST: gi|58692216|gb|CK080903.1|CK080903
genomic: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgt ... ctggtttcagATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTA
EST: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAG ATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTA
genomic: AGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgt ... ctggtttcagATATTTGCTAGGCCATTTATTGGAGCAATGGATGGCCATGTTGATGCTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTGAATACACCAGGGCTCTTAATGCTGCGAAGTTAGAGAAGgtttgtgtgtcatttcttctctgtgttttttttctttcatagtacagattttgatgtgaactttgctgctctggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC