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GTAAATGAAGATACAAATTGCTATTCCTTTGATGCTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagcatttggattttggaacctttttttttataccctgttttctttaaaatagatatatttgcaaatattgatcccttgtaaagaaaaaaagtta...
species | Oryza sativa |
transcript | LOC_Os01g13730.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGT GATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACCGGGTTCCTEST: gi|58676735|gb|CK065422.1|CK065422
genomic: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagca ... ttcttcacagGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTA-CGGGTTCCT
EST: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGT GATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTAEST: gi|218502449|gb|FG965484.1|FG965484
genomic: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagca ... ttcttcacagGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTA
EST: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGT GATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTAEST: gi|58665877|gb|CK054563.1|CK054563
genomic: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagca ... ttcttcacagGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTA
EST: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGT GATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTAEST: gi|3759655|gb|C96913.1|C96913
genomic: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagca ... ttcttcacagGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTA
EST: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGT GATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTA
genomic: AGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagca ... ttcttcacagGATGGACATTGATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAATGAAGATACAAATTGCTATTCCTTTGATGCTAGAAAGCTTGATGAAGCCAAAGTTGTTCACAAGGGCCATGTTTCAGCAGTgtaagtagcatttggattttggaacctttttttttataccctgttttctttaaaatagatatatttgcaaatattgatcccttgtaaagaaaaaaagtta
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa