1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtacgtggactctcgaagatactatagtgaccttacattctagacatgtattggtgattttgcattaacaactttgttgtcaatgcttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG
species | Oryza sativa |
transcript | LOC_Os01g13730.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTATTCACCAACAGGGCGTGAATTTGTTACCGGGTTCCTACGATAGAACA GTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTEST: gi|58676735|gb|CK065422.1|CK065422
genomic: TTATTCACCAACAGGGCGTGAATTTGTTA-CGGGTTCCTACGATAGAACAgtacgtggac ... cttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACT
EST: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACA GTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTEST: gi|218502449|gb|FG965484.1|FG965484
genomic: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAgtacgtggac ... cttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACT
EST: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACA GTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTEST: gi|58665877|gb|CK054563.1|CK054563
genomic: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAgtacgtggac ... cttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACT
EST: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACA GTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTEST: gi|3759655|gb|C96913.1|C96913
genomic: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAgtacgtggac ... cttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACT
EST: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACA GTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACT
genomic: ATTATTCACCAACAGGGCGTGAATTTGTTACGGGTTCCTACGATAGAACAgtacgtggac ... cttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACT
tagacatgtattggtgattttgcattaacaactttgttgtcaatgcttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG
cattaac putative branch site (score: 25)
tgcttct putative PPT
attaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtggactctcgaagatactatagtgaccttacattctagacatgtattggtgattttgcattaacaactttgttgtcaatgcttctggcagGTGCGGATCTTCCAATATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG