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...acacttgttacctgtcagactgttatcttattgaacacggctttatggggtttccattgcatcagtcctgtctaaatcattttacctcttatctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTG
species | Oryza sativa |
transcript | LOC_Os01g13730.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|88347170|gb|CI631250.1|CI631250
genomic: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: GAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|88305455|gb|CI630617.1|CI630617
genomic: GAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: GAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTCTCTGGCAGEST: gi|58676735|gb|CK065422.1|CK065422
genomic: GAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|88385229|gb|CI630330.1|CI630330
genomic: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: GAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|87035464|gb|CI190086.1|CI190086
genomic: GAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: GCAGGGAGATATACCATACTAAGAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|218502449|gb|FG965484.1|FG965484
genomic: GCAGGGAGATATACCATACTAAGAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|58665877|gb|CK054563.1|CK054563
genomic: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|3759655|gb|C96913.1|C96913
genomic: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGEST: gi|88348688|gb|CI631382.1|CI631382
genomic: TATAATGGTGATCATAGCAGGGAGATATACCATACTAAGAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: GAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATCTGGTTTCTGGCAGEST: gi|88351589|gb|CI628809.1|CI628809
genomic: GAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
EST: GAGGATGCAAAG GGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
genomic: GAGGATGCAAAGgttcttttcc ... atctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAG
tggggtttccattgcatcagtcctgtctaaatcattttacctcttatctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTG
gtctaaa putative branch site (score: 33)
ttttacctcttatctt putative PPT
tctaaatcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacttgttacctgtcagactgttatcttattgaacacggctttatggggtttccattgcatcagtcctgtctaaatcattttacctcttatctttgcagGGTGTTTTGTGTGAAATACACCTATGATGGAACCTATTTGGTTTCTGGCAGTGATGATACGAATCTTCGGCTGTGGAAGTCCAAAGCTTCAGAACAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - cctgtca
- - - - - - - - - - - - - - - ttgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtct