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CCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcgtcctcgcttccgcttccccttggctgcttcatgttgctgtttgtaggttttgattggtagcagtgatgacttcgttggtttgctccctcg...
species | Oryza sativa |
transcript | LOC_Os01g13730.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTTTTTCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAG AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTEST: gi|29635042|gb|CB640051.1|CB640051
genomic: ATCGCG-CTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcg ... ctcccaacagAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
EST: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAG AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTEST: gi|29635043|gb|CB640052.1|CB640052
genomic: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcg ... ctcccaacagAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
EST: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAG AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTEST: gi|2310653|gb|C26808.1|C26808
genomic: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcg ... ctcccaacagAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
EST: TATCGCGCTCCACCGACGAGTTCACGCGGGAGC-CAGCCAGGACCTGCAG AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTEST: gi|29634783|gb|CB639792.1|CB639792
genomic: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcg ... ctcccaacagAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
EST: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAG AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTTEST: gi|58692216|gb|CK080903.1|CK080903
genomic: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcg ... ctcccaacagAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
EST: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAG AAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
genomic: TATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcg ... ctcccaacagAAAGTATTCCGCAATTATGATCCAGCACTTCGTTCTCAGGAGAAAGCGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCCGTGTCTCCTGACTGCGTCTGTGGCCGGGATGAGGGTGAAGGTGATATCGCGCTCCACCGACGAGTTCACGCGGGAGCGCAGCCAGGACCTGCAGgtgcgtcgcgtcctcgcttccgcttccccttggctgcttcatgttgctgtttgtaggttttgattggtagcagtgatgacttcgttggtttgctccctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc