1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctcaagatgtacatattttatatacattctgtgaaatcacggtgatgattgttaggtatgaacaattggctgagatcccccccctcccccctcc...
species | Oryza sativa |
transcript | LOC_Os01g11900.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG TGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGGEST: gi|33794446|gb|CF323107.1|CF323107
genomic: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctca ... tatgatatagTGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
EST: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG TGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGGEST: gi|29674263|gb|CB670538.1|CB670538
genomic: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctca ... tatgatatagTGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
EST: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG TGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGGEST: gi|29614473|gb|CB619486.1|CB619486
genomic: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctca ... tatgatatagTGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
EST: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG TGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGGEST: gi|163928632|gb|EG710905.1|EG710905
genomic: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctca ... tatgatatagTGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
EST: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG TGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGGEST: gi|58663807|gb|CK052493.1|CK052493
genomic: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctca ... tatgatatagTGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
EST: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG TGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
genomic: GCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctca ... tatgatatagTGCAAGGCTCGCTCTTCCTGGACCTGAAGAGAAGAGTTTAGTTACATCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAGgtaattctcaagatgtacatattttatatacattctgtgaaatcacggtgatgattgttaggtatgaacaattggctgagatcccccccctcccccctcc
- - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc