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gtaagtatggcataaaacagtttacattgaaagttgacataactctagtcatatgtgcatgcatgctattccatatagatttgcttatttgttggaattccaagttttggatcaaccatactcatctttagcaattcatgttgcagGACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGGTTGCGCTATGTCGATTCAGATAAAGCGAA
species | Oryza sativa |
transcript | LOC_Os01g11900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACAATTAGAGAGCGAGGAATGAATAACATGCTGGCAGAACGGACT-CCC GACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGEST: gi|29614473|gb|CB619486.1|CB619486
genomic: CACAATTAGAGAGCGAGGAATGAATAACATGCTGGCAGAACGGA-TAAAAgtaagtatgg ... catgttgcagGACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTG
EST: ACACAATTAGAGAGCGAGGAATGAATAACATGCTGGCAGAACGGATAAAA GACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGGEST: gi|29630219|gb|CB635228.1|CB635228
genomic: ACACAATTAGAGAGCGAGGAATGAATAACATGCTGGCAGAACGGATAAAAgtaagtatgg ... catgttgcagGACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGG
EST: ACACAATTAGAGAGCGAGGAATGAATAACATGCTGGCAGAACGGATAAAA GACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGG
genomic: ACACAATTAGAGAGCGAGGAATGAATAACATGCTGGCAGAACGGATAAAAgtaagtatgg ... catgttgcagGACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGG
ttggaattccaagttttggatcaaccatactcatctttagcaattcatgttgcagGACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGGTTGCGCTATGTCGATTCAGATAAAGCGAA
aagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatggcataaaacagtttacattgaaagttgacataactctagtcatatgtgcatgcatgctattccatatagatttgcttatttgttggaattccaagttttggatcaaccatactcatctttagcaattcatgttgcagGACTTCCTAAACCGATTGGTGAGAGACCATGGGAGCATCGATCTTGAGTGGTTGCGCTATGTCGATTCAGATAAAGCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA