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gtatgagacaacaactttgataaagtgaattcaacccaattactgtgttttgatggaccatctgtgttactttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG
species | Oryza sativa |
transcript | LOC_Os01g11900.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAG GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTEST: gi|33794446|gb|CF323107.1|CF323107
genomic: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAGgtatgagaca ... ttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCT
EST: GTATGAGCTTCACTATCAAATGATAACTTTTGTAAAG GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTEST: gi|29674263|gb|CB670538.1|CB670538
genomic: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAGgtatgagaca ... ttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCT
EST: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAG GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTEST: gi|29614473|gb|CB619486.1|CB619486
genomic: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAGgtatgagaca ... ttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCT
EST: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAG GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTEST: gi|58663807|gb|CK052493.1|CK052493
genomic: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAGgtatgagaca ... ttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCT
EST: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAG GTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCT
genomic: GTATGAGCTTCACTATCAAATGATAACTTTTGGAAAGgtatgagaca ... ttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCT
gaattcaacccaattactgtgttttgatggaccatctgtgttactttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG
ttttgat putative branch site (score: 45)
tgttactttccttct putative PPT
aattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagacaacaactttgataaagtgaattcaacccaattactgtgttttgatggaccatctgtgttactttccttctagGTATTTTGTACAAAAAGTAAGCCCAATTGCAACGCATGCCCAATGAGAGCTGAGTGCAAGCACTTTGCAAGTGCATTTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA