1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...acggagggagtacttatggatgccttttttgtccaagatgtcagtaacattttctttcagggatgtggatttttacttcttttttccctaactttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACTGTATGCAAGACTCCACTTTCCAGCAAGCAAAATTACCAGGAATAAAAA
species | Oryza sativa |
transcript | LOC_Os01g11900.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAG GATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACEST: gi|4715240|gb|AU056357.1|AU056357
genomic: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAGgtaatcattt ... actttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCAC
EST: AGGTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAG GATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACEST: gi|38469228|gb|CF953359.1|CF953359
genomic: AGGTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAGgtaatcattt ... actttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCAC
EST: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAG GATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACEST: gi|29614474|gb|CB619487.1|CB619487
genomic: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAGgtaatcattt ... actttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCAC
EST: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAG GATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACEST: gi|29674264|gb|CB670539.1|CB670539
genomic: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAGgtaatcattt ... actttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCAC
EST: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAG GATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCAC
genomic: GTTTGACAACTGAAGAAATACAACATTGCTTTTGGAGAGgtaatcattt ... actttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCAC
aacattttctttcagggatgtggatttttacttcttttttccctaactttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACTGTATGCAAGACTCCACTTTCCAGCAAGCAAAATTACCAGGAATAAAAA
ccctaac putative branch site (score: 52)
tttttacttctttttt CT-rich tract
atttttacttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggagggagtacttatggatgccttttttgtccaagatgtcagtaacattttctttcagggatgtggatttttacttcttttttccctaactttttcagGATTTGTGTGCGTGAGAGGCTTTGATAGGACATCAAGAGCACCCAGACCACTGTATGCAAGACTCCACTTTCCAGCAAGCAAAATTACCAGGAATAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgtg