1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAGgtgaaaacagaaagttcttaaagttgatcttagtttaattattataataccattaaaatatatgcaagtttctactttctagtatctcttttattagtgttcaaatgttatgcggcag
species | Oryza sativa |
transcript | LOC_Os01g11900.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAG GTATTTGCTGATCATGACTCAAGCCGGAACCCGATTGATGTTCCAAGGAGTEST: gi|38469228|gb|CF953359.1|CF953359
genomic: CAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAGgtgaaaacag ... tatgcggcagGTATTTGCTGATCATGACTCAAGCCGGAACCCGATTGATGTTCCAAGGAGT
EST: CAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAG GTATTTGCTGATCATGACTCAAGCCGGAACCCGATTGATGTTCCAAGGAGTEST: gi|29614474|gb|CB619487.1|CB619487
genomic: CAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAGgtgaaaacag ... tatgcggcagGTATTTGCTGATCATGACTCAAGCCGGAACCCGATTGATGTTCCAAGGAGT
EST: CAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAG GTATTTGCTGATCATGACTCAAGCCGGAACCCGATTGATGTTCCAAGGAGT
genomic: CAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAGgtgaaaacag ... tatgcggcagGTATTTGCTGATCATGACTCAAGCCGGAACCCGATTGATGTTCCAAGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAGgtgaaaacagaaagttcttaaagttgatcttagtttaattattataataccattaaaatatatgcaagtttctactttctagtatctcttttattagtgttcaaatgttatgcggcag
- - - - - - - - - - GAGAGG
- - - - - - - - - - AGAGGA