1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tctgattcactggttgggcaccagctagggaataggatgtaaaaaacttatcccgcagtttgttgacaatctgtttttctttgttgaaaattaaaaatagATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAG
species | Oryza sativa |
transcript | LOC_Os01g11900.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTG ATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATEST: gi|38469228|gb|CF953359.1|CF953359
genomic: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTGgtaagtagtt ... ttaaaaatagATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATAT
EST: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTG ATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATEST: gi|58673984|gb|CK062670.1|CK062670
genomic: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTGgtaagtagtt ... ttaaaaatagATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATAT
EST: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTG ATACCATGCCGAACAGCAATGAGAGGAEST: gi|29614474|gb|CB619487.1|CB619487
genomic: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTGgtaagtagtt ... ttaaaaatagATACCATGCCGAACAGCAATGAGAGGA
EST: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTG ATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATAT
genomic: GCAACAGTATAAGAGAAGCGCAGGCCCAAAAAGTTCGAGGGACACTGCTGgtaagtagtt ... ttaaaaatagATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATAT
acttatcccgcagtttgttgacaatctgtttttctttgttgaaaattaaaaatagATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAG
tgttgac putative branch site (score: 40)
tgtttttctttgttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgattcactggttgggcaccagctagggaataggatgtaaaaaacttatcccgcagtttgttgacaatctgtttttctttgttgaaaattaaaaatagATACCATGCCGAACAGCAATGAGAGGAAGCTTTCCACTTAATGGGACATATTTTCAAGTCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- tgattca
- - - - -ctggttg
- - - - - - - - - caccagc
- - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -cccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga