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gtatggaccagttcaccattttttggttatttatatgccacatcatatgcattttcacactcttcttttttgcacgaattgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCTGAACCAAGAAAAACTTGTGCGAATGCTTGGTAACATCCAAGCGATGCTT
species | Oryza sativa |
transcript | LOC_Os01g06600.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCG GTATC-GAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCTEST: gi|88344179|gb|CI654609.1|CI654609
genomic: CGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCGgtatggacca ... attgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCT
EST: GCATGGCAACCGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCG GTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCTEST: gi|56157778|gb|C26441.2|C26441
genomic: GCATGGCAACCGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCGgtatggacca ... attgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCT
EST: CATGGCAACCGATTGGTATATCAATGGGGGGTGTTTGATGTCTGCCATCG -TATCTGAAAGAAAGGEST: gi|29668419|gb|CB664694.1|CB664694
genomic: CATGGCAACCGATTGGTATATCAATGGGGG-TGTTTGATGTCTGCCATCGgtatggacca ... attgaaatagGTATCTGAAAGAAAGG
EST: GATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCG GTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCTEST: gi|29660291|gb|CB656566.1|CB656566
genomic: GATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCGgtatggacca ... attgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCT
EST: GCATGGCAACCGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCG GTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCT
genomic: GCATGGCAACCGATTGGTATATCAATGGGGGTGTTTGATGTCTGCCATCGgtatggacca ... attgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCT
atatgccacatcatatgcattttcacactcttcttttttgcacgaattgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCTGAACCAAGAAAAACTTGTGCGAATGCTTGGTAACATCCAAGCGATGCTT
aattgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaccagttcaccattttttggttatttatatgccacatcatatgcattttcacactcttcttttttgcacgaattgaaatagGTATCTGAAAGAAAGGAAACAGTTTGGAGTTCCTCTAGTAGCTTTTCAGCTGAACCAAGAAAAACTTGTGCGAATGCTTGGTAACATCCAAGCGATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA