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...ttgagtattcttggtacattttttggatgtatgaacctttgatgggcaagcaaataagtaattgtgcttagcataaattttgtggcttatcatgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTACTTTTGCTGATGTGCTCGTGGTATTAGCTAGGAATGCCAATACAAAAC
species | Oryza sativa |
transcript | LOC_Os01g06600.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|29666427|gb|CB662702.1|CB662702
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|29666426|gb|CB662701.1|CB662701
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|14713699|gb|AU197670.1|AU197670
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|33683998|gb|CF312237.1|CF312237
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTAGCCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGEST: gi|13165132|gb|AU173929.1|AU173929
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTA-CCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAG
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|56157778|gb|C26441.2|C26441
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|29666428|gb|CB662703.1|CB662703
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTEST: gi|29678764|gb|CB675039.1|CB675039
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
EST: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG GTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
genomic: AACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAGgttcagcact ... catgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGT
gcaagcaaataagtaattgtgcttagcataaattttgtggcttatcatgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTACTTTTGCTGATGTGCTCGTGGTATTAGCTAGGAATGCCAATACAAAAC
aaataagtaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagtattcttggtacattttttggatgtatgaacctttgatgggcaagcaaataagtaattgtgcttagcataaattttgtggcttatcatgaaacagGTACCTGGTGGGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTACTTTTGCTGATGTGCTCGTGGTATTAGCTAGGAATGCCAATACAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - attcttg
- - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcataa