1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taggttcagtgttctcagttaatttgtagtgtaccaattagaaggtacttggtgggtgttgcatacggttttatctgagtatatacaccttcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTATCAGGAAGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTAT
species | Oryza sativa |
transcript | LOC_Os01g06600.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTAEST: gi|29666427|gb|CB662702.1|CB662702
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTAEST: gi|29666426|gb|CB662701.1|CB662701
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTAEST: gi|2312322|gb|C28477.1|C28477
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: CTCGCTCGCNTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTAEST: gi|11863268|gb|AU063379.2|AU063379
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTAEST: gi|29666428|gb|CB662703.1|CB662703
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTAEST: gi|33675069|gb|CF303308.1|CF303308
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
EST: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAG CATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
genomic: CTCGCTCGCGTTTCCGCAGGCCACGCCGGCATCCATCTTCCCGCCATCAGgtgaggaaaa ... tcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTA
tacttggtgggtgttgcatacggttttatctgagtatatacaccttcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTATCAGGAAGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTAT
ccttcattt CT-rich tract
ttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggttcagtgttctcagttaatttgtagtgtaccaattagaaggtacttggtgggtgttgcatacggttttatctgagtatatacaccttcatttgcagCATCGGACTATTATCAGATTGATGATTTACTCACCACTGAAGAGCAGTCTATCAGGAAGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - -tgtacca
- - - - - - - - - - - - - - - - - - - - - - - -cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatac