1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtggaaaattgtctaatattcactttgattgtaagcaactcgtacaaatgagtaaatggcgcatagtatccacctaaaatatatttcctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG
species | Oryza sativa |
transcript | LOC_Os01g06600.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|29666427|gb|CB662702.1|CB662702
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|29666426|gb|CB662701.1|CB662701
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|14713699|gb|AU197670.1|AU197670
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|33683998|gb|CF312237.1|CF312237
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|13165132|gb|AU173929.1|AU173929
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|56157778|gb|C26441.2|C26441
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: CTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|29666428|gb|CB662703.1|CB662703
genomic: CTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|29678764|gb|CB675039.1|CB675039
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAEST: gi|33675069|gb|CF303308.1|CF303308
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACA
EST: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGG GCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTC
genomic: AGCAGAAGTACTTGCCATCCCTTGCTCAACTTACTGCTGTTGGTTGCTGGgtacgtggaa ... ctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTC
tacaaatgagtaaatggcgcatagtatccacctaaaatatatttcctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG
acctaaa putative branch site (score: 23)
tatatttcctttct CT-rich tract
taaaatatatttcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtggaaaattgtctaatattcactttgattgtaagcaactcgtacaaatgagtaaatggcgcatagtatccacctaaaatatatttcctttctgtagGCATTGACAGAACCAAATCATGGAAGCGATGCAAGCTCTTTGATAACTACAGCAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT