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...tttgattaactagataatatgcccttgacaaactttattggtcatataataacctgcctttagaagatgacataaccatttcgtaaatttgctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCCTCGGTGTAGCTGGAGGCACAATAAAG
species | Oryza sativa |
transcript | LOC_Os01g06600.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|29666427|gb|CB662702.1|CB662702
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|29666426|gb|CB662701.1|CB662701
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|2312322|gb|C28477.1|C28477
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|11863268|gb|AU063379.2|AU063379
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|29666428|gb|CB662703.1|CB662703
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|29678764|gb|CB675039.1|CB675039
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCEST: gi|33675069|gb|CF303308.1|CF303308
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
EST: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACG TACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
genomic: AGAATGTCAGGGCTATAATGGAGAAAGAAATTGCACCCATTATGGCAACGgtatgtcaat ... gctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGC
ataataacctgcctttagaagatgacataaccatttcgtaaatttgctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCCTCGGTGTAGCTGGAGGCACAATAAAG
taaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgattaactagataatatgcccttgacaaactttattggtcatataataacctgcctttagaagatgacataaccatttcgtaaatttgctactgcagTACTGGGAGAAAGCAGAGTTCCCATTTCATGCCATTCCTAAACTTTCAAGCCTCGGTGTAGCTGGAGGCACAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - -tatgccc
- - - - - - - - - - - - - -acaaact