1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTGGACTTCCAGAATGGCTCGTGAGGTGGTTTCTCTCGGTCGAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagacctcatgtaggatattgagatattcatatgccatcattcaatacttaattaatgatttttattatctccgtag
species | Oryza sativa |
transcript | LOC_Os01g06600.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|88227372|gb|CI226852.1|CI226852
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: TTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|86504925|gb|CI147558.1|CI147558
genomic: TTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTAGATACTCATACGAAGGCACATACGACATCEST: gi|33683999|gb|CF312238.1|CF312238
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTTTGTGACCTGGAGCCTATATACCCATACGAAGGCACATACGAGCATEST: gi|18386375|gb|BM419573.1|BM419573
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGA-CAT
EST: AGAATT-TTGGGT-GAAATGGAATTTT-GCTGGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|18385617|gb|BM418816.1|BM418816
genomic: AGAATTGTTGGGTGGAAATGGAATTTTGGCT-GATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAATTGTTTGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCCACAA- GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATEST: gi|59930157|gb|AB178699.1|AB178699
genomic: GAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTG-CA-AAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACAT
EST: TGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|44666104|gb|CR279538.1|CR279538
genomic: TGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|4715706|gb|AU056822.1|AU056822
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|86537166|gb|CI177372.1|CI177372
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|88903725|gb|CI089263.1|CI089263
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: TGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|7839222|gb|AU090633.1|AU090633
genomic: TGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|29668419|gb|CB664694.1|CB664694
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|87015276|gb|CI275466.1|CI275466
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|86425749|gb|CI070846.1|CI070846
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: ATTTTCTAGTTGCAAAG ACATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|29660317|gb|CB656592.1|CB656592
genomic: ATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|29660291|gb|CB656566.1|CB656566
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATCEST: gi|58593876|gb|CF992184.1|CF992184
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
EST: GAGAATCGTGGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAG GCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
genomic: GAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagac ... atctccgtagGCATTCTGTGACCTGGAGCCTATATACTCATACGAAGGCACATACGACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGGACTTCCAGAATGGCTCGTGAGGTGGTTTCTCTCGGTCGAGAATTGTTGGGTGGAAATGGAATTTTGGCTGATTTTCTAGTTGCAAAGgtagatagacctcatgtaggatattgagatattcatatgccatcattcaatacttaattaatgatttttattatctccgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG