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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttcttgtcttcttcaatttagacagtacttacacctgaagcgtgaatctagactgaactgcatacttctggactttgacag

Basic information

species Oryza sativa
transcript LOC_Os01g02020.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g02020.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM5G860137_T01 (Zea mays), 5'ss of exon 10
ATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttcttgtcttcttcaatttagacagtacttacacctgaagcgtgaatctagactgaactgcatacttctggactttgacag
 ||||| ||  ||||||| ||||| |||||||||||| |||||||||| | ||| ||||||||||| ||||||||||||||  |||| || |||||||| ||| ||| | |   | | ||  ||  | |||||||||| |||||||   ||| |||||| |||||  ||||| | ||| ||| |||
GTTTACGACAGCTCCAGCCCTTGCCATTCCAAAGGCTATATCAAATGCAGCTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatcggtctttccagcttcaatagtacttacatctgaagcacaaatttagacttaactg--tacttgtcgacattggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58609247|gb|CK037280.1|CK037280
EST:     GTCTCCAAACTTCGCAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|89182799|gb|CI045557.1|CI045557
EST:     CACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCATTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: CACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|86431728|gb|CI085339.1|CI085339
EST:     TCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: TCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|88223118|gb|CI222967.1|CI222967
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|88982218|gb|CI027795.1|CI027795
EST:     AATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: AATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|58657491|gb|CK046171.1|CK046171
EST:     GTCTCCCAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|29675317|gb|CB671592.1|CB671592
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|218504789|gb|FG958555.1|FG958555
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|88243051|gb|CI244173.1|CI244173
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|86427944|gb|CI073041.1|CI073041
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|88214442|gb|CI214291.1|CI214291
EST:     GAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|86831084|gb|CI295561.1|CI295561
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|29640751|gb|CB645758.1|CB645758
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|29641200|gb|CB646207.1|CB646207
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|66915792|gb|CX102640.1|CX102640
EST:     GTCTCCAAACTTCGCAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|88248007|gb|CI247856.1|CI247856
EST:     GTCTCCCAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|218487009|gb|FG958888.1|FG958888
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|86851471|gb|CI314069.1|CI314069
EST:     GTCTCCCAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCG-TGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|89169716|gb|CI110075.1|CI110075
EST:     GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: gi|86528447|gb|CI168653.1|CI168653
EST:     GTCTCCAAGCTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC                         GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG