1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccctcccatgtttgttcttctctggaaatgtctgagaaccaaaaaaaaatgcagttatttgttgtactgattattcatgtatagttttgtgtaa...
species | Oryza sativa |
transcript | LOC_Os01g02020.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86886429|gb|CI336132.1|CI336132
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACCTTCCTCCTTGTGAAGTTGGCGCGAGCAAAAEST: gi|89182799|gb|CI045557.1|CI045557
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88470166|gb|CI407437.1|CI407437
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86431728|gb|CI085339.1|CI085339
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88223118|gb|CI222967.1|CI222967
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88457931|gb|CI542113.1|CI542113
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88982218|gb|CI027795.1|CI027795
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|58657491|gb|CK046171.1|CK046171
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|29675317|gb|CB671592.1|CB671592
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88243051|gb|CI244173.1|CI244173
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86427944|gb|CI073041.1|CI073041
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88214442|gb|CI214291.1|CI214291
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88261356|gb|CI364932.1|CI364932
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|89191076|gb|CI392929.1|CI392929
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86831084|gb|CI295561.1|CI295561
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88260275|gb|CI362568.1|CI362568
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GAGGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGCTTGTGAAGTTGGCGCGAGCAAAEST: gi|86600622|gb|CI356379.1|CI356379
genomic: GA-GTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCG-TTGTGAAGTTGGCGCGAGCAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACCTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|29640751|gb|CB645758.1|CB645758
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88276828|gb|CI395991.1|CI395991
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|22306530|gb|BQ907752.1|BQ907752
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|29641200|gb|CB646207.1|CB646207
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|66915792|gb|CX102640.1|CX102640
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTEST: gi|86868992|gb|CI334364.1|CI334364
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCT
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88248007|gb|CI247856.1|CI247856
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCCAAAEST: gi|218487009|gb|FG958888.1|FG958888
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88272428|gb|CI386283.1|CI386283
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGACCAAAAEST: gi|86431249|gb|CI083672.1|CI083672
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|88322667|gb|CI542995.1|CI542995
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTNTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86851471|gb|CI314069.1|CI314069
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|89190720|gb|CI392573.1|CI392573
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86494598|gb|CI137231.1|CI137231
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|89169716|gb|CI110075.1|CI110075
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAAEST: gi|86528447|gb|CI168653.1|CI168653
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
EST: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTTTTGTGGAACTCAT GCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
genomic: GGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccct ... cttgatgcagGCAACCATCACTATTTACACGTTCCTCGTTGTGAAGTTGGCGCGAGCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCATgtaagtccctcccatgtttgttcttctctggaaatgtctgagaaccaaaaaaaaatgcagttatttgttgtactgattattcatgtatagttttgtgtaa
- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG