1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttctctagtttaaagtcaaattatgctatatgcatgtttacttgatgtgtgactgtagtgcacctctcttccttctcgtttaccttccaaaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAG
species | Oryza sativa |
transcript | LOC_Os01g02020.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCGGTGGACAGAAAGCCAAGAGTCTEST: gi|29675317|gb|CB671592.1|CB671592
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTEST: gi|218504789|gb|FG958555.1|FG958555
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTEST: gi|29640751|gb|CB645758.1|CB645758
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTEST: gi|29641200|gb|CB646207.1|CB646207
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTEST: gi|66915792|gb|CX102640.1|CX102640
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTEST: gi|218480326|gb|FG963594.1|FG963594
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
EST: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAG TGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
genomic: ACTTTCAAGAAGAATGGTTCTGTAACTGCCGGCAATTCTTCTAGTATAAGgtttacttat ... aaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCT
atgtgtgactgtagtgcacctctcttccttctcgtttaccttccaaaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAG
acttgat putative branch site (score: 5)
cctctcttccttctcg putative PPT
aaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctctagtttaaagtcaaattatgctatatgcatgtttacttgatgtgtgactgtagtgcacctctcttccttctcgtttaccttccaaaattcgcagTGATGGTGCTGCTGCAATCGTGCTAGTCAGTGGACAGAAAGCCAAGAGTCTTGGCCTTCAAGTTATTGCAAGGATCAGAGGGTATGCGGATGCTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT