1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCACTTAAGACTGAGGAGAGAAAGGTAGATACTAAAGTTTTTGAATCCATGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggcttatggctctatgtctcaattctactttagttttacatattaaatttgttttactaatacttgatgtttgtctcatttggattgtttatttgaag
species | Glycine max |
transcript | GLYMA20G39080.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTG GGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCCEST: gi|193367957|gb|FK333021.1|FK333021
genomic: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggctta ... ttatttgaagGGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCC
EST: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTG GGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCCEST: gi|6481724|gb|AW200995.1|AW200995
genomic: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggctta ... ttatttgaagGGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCC
EST: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTG GGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCCEST: gi|31307409|gb|CD392612.1|CD392612
genomic: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggctta ... ttatttgaagGGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCC
EST: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTG GGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCCEST: gi|6454768|gb|AW185451.1|AW185451
genomic: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggctta ... ttatttgaagGGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCC
EST: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTG GGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCCEST: gi|10843741|gb|BF067004.1|BF067004
genomic: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggctta ... ttatttgaagGGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATAAATCC
EST: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTG GGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATANAATC
genomic: TGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggctta ... ttatttgaagGGATCTGATAAGGACAAGCGCAGAGAGACTCTTGAGAAGGAAGATA-AATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACTTAAGACTGAGGAGAGAAAGGTAGATACTAAAGTTTTTGAATCCATGCAGCAGCTGTCAAACAAGAAAGACATTGATGACATCTTTATTAAGCTGgtaaggcttatggctctatgtctcaattctactttagttttacatattaaatttgttttactaatacttgatgtttgtctcatttggattgtttatttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG