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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCGGTGGTGGTGGACGTGGAGCTTTCGGTAATGGAGAAGCTGCTGAAGATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttgtacatctatgagttttatagttggctgttactttggcttttggctttgctattgatataatttgttctacttgcag

Basic information

species Glycine max
transcript GLYMA20G39080.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193395392|gb|FK357885.1|FK357885
EST:     ACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: ACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|120491229|gb|EH219396.1|EH219396
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|208081357|gb|GD880345.1|GD880345
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCT
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCT
EST: gi|208074993|gb|GD875490.1|GD875490
EST:     GATGGTCTCCCACGAAGACCATTCGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
EST: gi|207836172|gb|GD807443.1|GD807443
EST:     GATGGTCTCCCACGAAGACCATTCGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
EST: gi|298180587|gb|HO025674.1|HO025674
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|208316811|gb|GE115845.1|GE115845
EST:     ACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: ACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|193665764|gb|FK612969.1|FK612969
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGGCGCGG                         AAATGAATTCAAACGGGA-GGTGC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGC
EST: gi|192325319|gb|FK017135.1|FK017135
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|192322787|gb|FK014478.1|FK014478
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|298183557|gb|HO028770.1|HO028770
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|208139765|gb|GD933435.1|GD933435
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
EST: gi|23057549|gb|BU578223.1|BU578223
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|207695820|gb|GD677665.1|GD677665
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|24136573|gb|BU927083.1|BU927083
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|10843741|gb|BF067004.1|BF067004
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|193336011|gb|FK298037.1|FK298037
EST:     ACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: ACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|207750840|gb|GD723449.1|GD723449
EST:     GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGAC
EST: gi|208274708|gb|GE067122.1|GE067122
EST:     GATGGTCTCCCACGAAGACCATTCGAACGTCGCAATGGGACTGGACGCGG                         AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG
genomic: GATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttg ... ctacttgcagAAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGCGGTGGTGGTGGACGTGGAGCTTTCGGTAATGGAGAAGCTGCTGAAGATGGTCTCCCACGAAGACCATTTGAACGTCGCAATGGGACTGGACGCGGgtaaattttgtacatctatgagttttatagttggctgttactttggcttttggctttgctattgatataatttgttctacttgcag

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