1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcacttcttttgaccaccctctgcacatggattctgttttatactattttcatgaatttttattgttgtgtatttcttttctctcttgaattttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCTTCAGGTGAGGATGATGTTGCGGCAATTGGAAACAAGGAGAATCCTGCT
species | Glycine max |
transcript | GLYMA20G39080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCEST: gi|208287458|gb|GE084870.1|GE084870
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTG-AATGAAACTTCTAAGAATTTTGGTGATGAAAAGC
EST: AACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|120491229|gb|EH219396.1|EH219396
genomic: AACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|298180587|gb|HO025674.1|HO025674
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCTCA GGCAACTGATGAAGTGAATGAAEST: gi|208316811|gb|GE115845.1|GE115845
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAA
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|192325319|gb|FK017135.1|FK017135
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGGAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|192322787|gb|FK014478.1|FK014478
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGGAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|23057549|gb|BU578223.1|BU578223
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGEST: gi|207695820|gb|GD677665.1|GD677665
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAG
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGNTGAAGTGAATGAEST: gi|24136573|gb|BU927083.1|BU927083
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGA
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|208284294|gb|GE082826.1|GE082826
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|193306276|gb|FK273285.1|FK273285
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTEST: gi|10843741|gb|BF067004.1|BF067004
genomic: GAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGT
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|193336011|gb|FK298037.1|FK298037
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCEST: gi|207750840|gb|GD723449.1|GD723449
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
attttcatgaatttttattgttgtgtatttcttttctctcttgaattttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCTTCAGGTGAGGATGATGTTGCGGCAATTGGAAACAAGGAGAATCCTGCT
tttcttttctctcttg CT-rich tract
aatttttattgttgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacttcttttgaccaccctctgcacatggattctgttttatactattttcatgaatttttattgttgtgtatttcttttctctcttgaattttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCCTTCAGGTGAGGATGATGTTGCGGCAATTGGAAACAAGGAGAATCCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA