1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gccttttatttctattgttgtatgtagaaaccctagtgaatgcttttagtttgtttaaattttattgcttaatagtattttttttttccctgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTTTGCAAGCACTTAAGACTGAGGAGAGAAAGGTAGATACTAAAGTTTTTG
species | Glycine max |
transcript | GLYMA20G39080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAEST: gi|208287458|gb|GE084870.1|GE084870
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGA
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGEST: gi|120491229|gb|EH219396.1|EH219396
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGG
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|193313514|gb|FK280071.1|FK280071
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATEST: gi|208128978|gb|GD927578.1|GD927578
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATAT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGEST: gi|208316811|gb|GE115845.1|GE115845
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATG
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATEST: gi|6481724|gb|AW200995.1|AW200995
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATAT
EST: AGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|192325319|gb|FK017135.1|FK017135
genomic: AGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAA GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAACGAAG-CTEST: gi|192322787|gb|FK014478.1|FK014478
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|193645898|gb|FK593883.1|FK593883
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|193630216|gb|FK581773.1|FK581773
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGEST: gi|31307409|gb|CD392612.1|CD392612
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGG
EST: CAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|193445746|gb|FK414027.1|FK414027
genomic: CAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGEST: gi|24136573|gb|BU927083.1|BU927083
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATG
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|208284294|gb|GE082826.1|GE082826
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGEST: gi|10843741|gb|BF067004.1|BF067004
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATG
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTEST: gi|193336011|gb|FK298037.1|FK298037
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCT
EST: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAG GAGATGACTCTCGA
genomic: ACAAGGAGAATCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGgtgattgttc ... tgttggatagGAGATGACTCTCGA
ttagtttgtttaaattttattgcttaatagtattttttttttccctgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTTTGCAAGCACTTAAGACTGAGGAGAGAAAGGTAGATACTAAAGTTTTTG
gcttaat putative branch site (score: 4)
tattttttttttccct putative PPT
ttgtttaaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttttatttctattgttgtatgtagaaaccctagtgaatgcttttagtttgtttaaattttattgcttaatagtattttttttttccctgttggatagGAGATGACTCTCGAGGAATATGAAAAAGTACTAGAAGAGAGAAGGAAGGCTTTGCAAGCACTTAAGACTGAGGAGAGAAAGGTAGATACTAAAGTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
gcctttt
- - - - - - - - - tgtatgt
- - - - - - - - - - - - - - -accctag
- - - - - - - - - - - - - - - - - - -gaatgct