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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcacttcttttgaccaccctctgcacatggattctgttttatactattttcatgaatttttattgttgtgtatttcttttctctcttgaattttacttag

Basic information

species Glycine max
transcript GLYMA20G39080.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193395392|gb|FK357885.1|FK357885
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAAATGAAACTTCTAAGAATTTTGGTGATGAAAAGC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTG-AATGAAACTTCTAAGAATTTTGGTGATGAAAAGC
EST: gi|208287458|gb|GE084870.1|GE084870
EST:     AACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: AACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|120491229|gb|EH219396.1|EH219396
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|298180587|gb|HO025674.1|HO025674
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCTCA                         GGCAACTGATGAAGTGAATGAA
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAA
EST: gi|208316811|gb|GE115845.1|GE115845
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|192325319|gb|FK017135.1|FK017135
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGGAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|192322787|gb|FK014478.1|FK014478
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGGAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|23057549|gb|BU578223.1|BU578223
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAG
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAG
EST: gi|207695820|gb|GD677665.1|GD677665
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGNTGAAGTGAATGA
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGA
EST: gi|24136573|gb|BU927083.1|BU927083
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|208284294|gb|GE082826.1|GE082826
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|193306276|gb|FK273285.1|FK273285
EST:     GAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGT
genomic: GAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGT
EST: gi|10843741|gb|BF067004.1|BF067004
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|193336011|gb|FK298037.1|FK298037
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
EST: gi|207750840|gb|GD723449.1|GD723449
EST:     GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCA                         GGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC
genomic: GAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcactt ... ttttacttagGGCAACTGATGAAGTGAATGAAACTTCTAAGAATTTTGGTGATGAAAAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATGAATTCAAACGGGAAGGTGCTGGGAGAGGGAACTGGGGTGTACAGACTGATGAATTTGCCCAgtaagcacttcttttgaccaccctctgcacatggattctgttttatactattttcatgaatttttattgttgtgtatttcttttctctcttgaattttacttag

- - - - - - - - - - - - -  GAGAGG