1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactagttcgtttgtccttgttacttgactttattttgtacatcaattgattgattggaacagaagcaaataaatccagtaatattttgttgcatagattagccatagccttataattgatagaactcttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCAAATACAGTACAGACTCTGATGGCAAAATCAAGATTTAAGGCAAAGATGA
species | Glycine max |
transcript | GLYMA20G38960.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG GTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCAEST: gi|192322148|gb|FK012252.1|FK012252
genomic: GACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAGgtactagttc ... cttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCA
EST: GACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG GTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCAEST: gi|22932228|gb|BU549367.1|BU549367
genomic: GACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAGgtactagttc ... cttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCA
EST: GACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG GTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCAEST: gi|208209417|gb|GE005185.1|GE005185
genomic: GACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAGgtactagttc ... cttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCA
EST: CTGTTGTTGCTTCTAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG GTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCA
genomic: CTGTTGTTGC-TC-AGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAGgtactagttc ... cttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCA
tattttgttgcatagattagccatagccttataattgatagaactcttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCAAATACAGTACAGACTCTGATGGCAAAATCAAGATTTAAGGCAAAGATGA
aattgat putative branch site (score: 4)
ctcttc putative PPT
ttataattgatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagttcgtttgtccttgttacttgactttattttgtacatcaattgattgattggaacagaagcaaataaatccagtaatattttgttgcatagattagccatagccttataattgatagaactcttcgggcagGTAATATTTTGCGGTGTCCTGTTGGTCTTAATGGCTGTTGGGAACTTTGCAAATACAGTACAGACTCTGATGGCAAAATCAAGATTTAAGGCAAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG