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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggctgctatgatatatgtcacttaagttatatgcatgactatgagccggttttttattctcatgtgatattcatgtttctataacgttcatga...

Basic information

species Glycine max
transcript GLYMA20G38960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 8
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggctgctatgatatatgtcacttaagttatatgcatgactatg--agccggttt--tttattctcatgtgatattcatgtttctataacgttcatga
|||||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||| | || ||||| ||||| ||||  || ||||| |  |   | || | | |||  | | | ||||| |||||   |  ||   | |  ||||  |||  |||   |||  |  |||| |    |    ||  |||
GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagcttttttctgt-acatagatgaatcaagtt-tatgctaaaacattttaacgcgtttcatttgctctaccgtggcac-catgctagagtggt-ttactga

upper sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 8
GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggctgctatgatatatgtcacttaagttatatgcatgac-tatgagccggttttttattctcatgtgatattcatgtttc---tataacgttcatga-
|| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||| | ||| | |||||||||||||||||||  || ||||| |  |       ||      || || ||||   ||||  |   | || ||    |||| |     | |||  || | | | | |    ||| || |   | | 
GCAAAGAGAATGGATGTTGTTTGGGGAGAAACAGCTGGGGTAGATGGTCAATTATGGCTGTTGTGTCCCATACTTTTCATTTTACAGgtgatttaaa----atagatcttgacaattaataaatatttacagcataagatttcgtttctcccaattatg-aatgtgcgtctattatatatgacatattttac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319100|gb|FK010636.1|FK010636
EST:     GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG                         GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
EST: gi|192322148|gb|FK012252.1|FK012252
EST:     GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTT-CACGTTGCAG                         GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
EST: gi|207828433|gb|GD799718.1|GD799718
EST:     GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG                         GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
EST: gi|22932228|gb|BU549367.1|BU549367
EST:     GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG                         GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG