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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttag

Basic information

species Glycine max
transcript GLYMA20G38960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgata-------ctg-ttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgat-taaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttag----------------
                                                    ||||||||||||||||||||||| |||||||| ||||| || |||||||| | |       ||| | ||| || | | |  ||||   | || |   | || ||  |   |  |||     | |      ||||     | | | ||||| ||| || |   | | |    || ||| |   ||  | |  ||  |   |   |||  |||  ||  || |   ||  | |                 
----------------------------------------------------AACAGATATCAACGCCAAAGACTATATACTCGGATTGCTTTAGGAAAGgtaacatatttttctgatcaaaaaacaaactgatactctatgttcc---tgctgttccaaagaactttctggtatctatttgcttttttatggcat-ttcaagcatcatgtggctatatgcacttacctgtgagatcatgtcatt--tccttcattttagtccaagtaattttgcataactgaattttcttttttggtag

upper sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtg--atactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttag
 |  ||||| || || ||||||||||||||||| || || |||||| ||||||| |||||||| ||||||||| | || ||||| |||||| | |||||||||  ||||| ||      || ||||||   |        | | || |      | | |||    |       |    |    | ||| | ||||                                                                                  
GCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGgtgccatactatt------tacatttttctctctccaaatcatatccaccactatgaaatt---gctgtaaaaatgtgtgtggtggtcattttcag---------------------------------------------------------------------------------

upper sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttag
 || ||||| ||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||||||| | || ||||| |||||| | |||||||||    | |||  | || |    ||  || || ||   ||    ||| || || | |||           ||| |||   | ||  | |    |   |                                                                            
CCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGgtg-ccttcttatgtcatgtgcactt--tttctcttcagttcaaaattctatttgtttttg---------taaagtttgcgttgtggtttatgttttag----------------------------------------------------------------------------

upper sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgttaaataat----atatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttag
||||||||| ||||| ||||||||||||||||||||||| |||||  | ||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||  | |    ||| ||    ||   ||||   |||| | | |    | |||| | |    |||   ||   | |  ||||   | |   | ||   |                                                                                
ACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCATTGGGAAAGgtgtcatttcacaattattatcatgcatttaaaagcttatgcatgccttcttttggcttc--tttgggcatggttattctttgtcttgattttttgggtggg-----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319100|gb|FK010636.1|FK010636
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|192322148|gb|FK012252.1|FK012252
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|207828433|gb|GD799718.1|GD799718
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|22932228|gb|BU549367.1|BU549367
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA