1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actgaaattttgttttattcccattctggaaatcattgacctgacatagcgcagaggtttgacattcttgaattatatttgtactcctttcttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG
species | Glycine max |
transcript | GLYMA20G38960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGGEST: gi|192322148|gb|FK012252.1|FK012252
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
EST: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTT-CACGTTGCAG GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGGEST: gi|207828433|gb|GD799718.1|GD799718
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
EST: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGGEST: gi|22932228|gb|BU549367.1|BU549367
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
EST: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG GGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
genomic: GTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggc ... cttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGG
atagcgcagaggtttgacattcttgaattatatttgtactcctttcttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG
gtttgac putative branch site (score: 4)
tttgtactcctttctt putative PPT
attcttgaattatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaaattttgttttattcccattctggaaatcattgacctgacatagcgcagaggtttgacattcttgaattatatttgtactcctttcttggttcagGGATTTGAGGCATATGTTGGACTGTTGTTGCTCAGGACTGCAGTTGTTGGGGTTGTTTCTGAGTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - -cccattc
- - - - - - - - - - - - - - - - - - - -cctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacattc