1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gggcggacaggaattttatttggtttgcgtgttgatattgtcatccttacattgcatattgggaaaccttttggcaaataaacttactatatggttacagGTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG
species | Glycine max |
transcript | GLYMA20G38960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTG GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACEST: gi|192319099|gb|FK010635.1|FK010635
genomic: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatagtcat ... atggttacagGTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCAC
EST: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTG GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACEST: gi|192320395|gb|FK012253.1|FK012253
genomic: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatagtcat ... atggttacagGTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCAC
EST: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTG GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACEST: gi|209701984|gb|BW664584.1|BW664584
genomic: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatagtcat ... atggttacagGTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCAC
EST: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTG GTGGATATATCATCATTATTGTGCTATG
genomic: GCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatagtcat ... atggttacagGTGGATATATCATCATTATTGTGCTATG
cttacattgcatattgggaaaccttttggcaaataaacttactatatggttacagGTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG
aacttac putative branch site (score: 2)
aaataaacttactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggcggacaggaattttatttggtttgcgtgttgatattgtcatccttacattgcatattgggaaaccttttggcaaataaacttactatatggttacagGTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
gggcgga
- - - - - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa