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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG

Basic information

species Glycine max
transcript GLYMA20G38960.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 7
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
                                                                                   | | | ||   |||||  |  | ||||  | |||  |  |  ||| |||      | | | | |    |  | ||| |  | | |  ||||||||||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||| | || ||||| ||||| ||||  || |||
---------------------------------------------------------------------------------gtgccttcttatgtcatg--tgcactttttctcttcagttcaaaattctatt-----tgtttttgtaaagtttgcgttgtggtttatgttttagGCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAG

upper sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 7
gtgatactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
                                                                           |  ||||  |  |   |      |  | |  |||||    |||  |   | |  | | |   | | || | |   ||     ||||  | |    || |||| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||| | ||| | |||||||||||||||||||  || |||
---------------------------------------------------------------------------taacaatgttttttcccctctgagtgtgagattttcaggatccagaatccctaatcttggacaaacatgtttacaatttactttttatttttattttcagGCAAAGAGAATGGATGTTGTTTGGGGAGAAACAGCTGGGGTAGATGGTCAATTATGGCTGTTGTGTCCCATACTTTTCATTTTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319100|gb|FK010636.1|FK010636
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|192322148|gb|FK012252.1|FK012252
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|207828433|gb|GD799718.1|GD799718
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|22932228|gb|BU549367.1|BU549367
EST:     AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtgatactgt ... tgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcattttatagttaatatatatatttgatccgtgtttttctctgtactttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAG
                                     tttttctctgtacttt  CT-rich tract
     attttatagttaatat  TA-rich tract