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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTGCTGCGCAAGCTGGCAAACATAACGATAAAAGAGAAAGCTATGGCAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAGgtaagaaacttgatagttcctcatgttcattgagttaattcattgaaattggaagtccactaaccataattcattcaatttatttcctagtttttgttct...

Basic information

species Glycine max
transcript GLYMA20G38690.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38690.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g03530.t01 (Vitis vinifera), 5'ss of exon 7
ATTGCTGCTGCGCAAGCTGGCAAACATAACGATAAAAGAGAAAGCTATGGCAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAGgtaagaaacttgatagttcctcatgttcattgagttaattcattgaaattggaagtccactaaccataattcattca-----atttatttcctagtttttgttct
|| |||||||| |||||||| || ||||| |||||||||||||| |||||  || | ||||| || ||||||||||| |||||  | || ||  |||| ||| ||||   || |      | |   ||       ||||  ||   |  ||    || ||| |  |      ||        | | ||||  | |     |  | 
ATAGCTGCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGTTATGGAGACTCCTTAATAATTGATCCATGGGGAACAATAATTGGCCGTCTACCTGgtgagaa--ctggttcccttttacactctgatgtctaatctat--gatgtgtgcctctactcaaaaaggacaatgagggagcagtgattttatggggaaagaac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693255|gb|AW761350.1|AW761350
EST:     CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAG                         ATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTG
genomic: CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAGgtaagaaact ... tctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTG
EST: gi|9900235|gb|BE609203.1|BE609203
EST:     CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAA                         ATCGTTAGTCTACAGGCATTGTAGTAACTGATATTGATTTATCATTTGTTG
genomic: CAACACATTAATTATCGATCCATGGGGGACAATTGTAGGACGATTACCAGgtaagaaact ... tctttttcagATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTG